Hey!

A new version of the Soybean Expression Atlas is now available.

Click here to be redirected to the Soybean Expression Atlas v2 website.

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Search by locus identifiers

Search the expression database using Soybean locus IDs (genome version: Gmax_275_Wm82.a2.v1). Select required tissue categories which will update related BioProjects in the Available Bioprojects panel. Select desired BioProject IDs into the Selected BioProjects panel. This will update the Available BioSample IDs.

Explore sample clustering




Examples: #1 #2 #3 #4 #5
Load sample locus ids

[One locus identifiers per line.]

Available BioProjectsAll the BioProjects from selected tissues.
Press 'control' key to select multiple.
Selected BioProjectsBioProjects selected for search.
Press 'control' key to select multiple.
>>Add all IDs
>Add only the selected IDs
<Remove only the selected IDs
<<Remove all IDs
Available BioSamplesAll the BioSample from selected BioProjects.
Press 'control' key to select multiple.
Selected BioSamples * BioSamples Selected for searching.
(max. 1243 samples)
>> > < <<

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†The TPM values for 11 SOLiD samples from BioProject PRJNA241144 are from StringTie.

 
 
TypeError		Python 3.10.12: /usr/bin/python3
Sat Nov 16 16:06:38 2024

A problem occurred in a Python script. Here is the sequence of function calls leading up to the error, in the order they occurred.

 /var/www/cgi-bin/gmax_atlas/search_gene_list.cgi in <module>
    160       </form>    
    161 ''')
=>  162 sql_query_fun.tissue_bioproj_js(db,tissues)
    163 page_template.footer()
    164 cursor.close()
sql_query_fun = <module 'sql_query_fun' from '/var/www/cgi-bin/gmax_atlas/sql_query_fun.py'>, sql_query_fun.tissue_bioproj_js = <function tissue_bioproj_js>, db = <mysql.connector.connection_cext.CMySQLConnection object>, tissues = ['']
 /var/www/cgi-bin/gmax_atlas/sql_query_fun.py in tissue_bioproj_js(db=<mysql.connector.connection_cext.CMySQLConnection object>, tissues=[''])
     40   bp = [a[0] for a in bp]
     41   print("bioproject_id_list['%s'] = "%t, end='')
=>   42   print("['","','".join(bp),"'];", sep="")     
     43  print('</script>')
     44 
builtin print = <built-in function print>, "','".join undefined, bp = [None], sep undefined

TypeError: sequence item 0: expected str instance, NoneType found
      args = ('sequence item 0: expected str instance, NoneType found',)
      with_traceback = <built-in method with_traceback of TypeError object>