Soybean Expression Atlas

Search by locus identifiers

Search the expression database using Soybean locus IDs (genome version: Gmax_275_Wm82.a2.v1). Select required tissue categories which will update related BioProjects in the Available Bioprojects panel. Select desired BioProject IDs into the Selected BioProjects panel. This will update the Available BioSample IDs.

Explore sample clustering

Locus IDs* (max. 500) Examples: #1 #2 #3 #4 #5

Load sample locus ids

_{[One locus identifiers per line.]}

Select Tissue

• Callus Shoot Inflorescences Flower Root
• Leaves Nodule Pod Seed Cotyledon
• Seed Coat Embryo Endosperm Hypocotyl Suspensor
• Seedling

Available BioProjectsAll the BioProjects from selected tissues.
Press 'control' key to select multiple.

Selected BioProjectsBioProjects selected for search.
Press 'control' key to select multiple.

Select BioProject

>>Add all IDs

>Add only the selected IDs

<Remove only the selected IDs

<<Remove all IDs

Available BioSamplesAll the BioSample from selected BioProjects.
Press 'control' key to select multiple.

Selected BioSamples * BioSamples Selected for searching.
(max. 1243 samples)

Select BioSample*

>> > < <<

Read Count* Raw TPM normalized (StringTie) TPM normalized (Kallisto^†)

.

^†The TPM values for 11 SOLiD samples from BioProject PRJNA241144 are from StringTie.

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Universidade Estadual do Norte Fluminense Darcy Ribeiro (UENF)
Av. Alberto Lamego, 2000 - Parque California,
Campos dos Goytacazes - RJ