PUBLICATIONS

Below are our most recent publications. For a full list, please visit Thiago Venancio’s Google Scholar page.

Relating ecological diversity to genetic discontinuity across bacterial species.

Passarelli-Araujo, Hemanoel, Thiago M. Venancio, and William P. Hanage.

Plant Physiology and Biochemistry 218 (2025): 109180.

Multiomic analysis of genes related to oil traits in legumes provide insights into lipid metabolism and oil richness in soybean.

Turquetti-Moraes, Dayana K., Cláudio Benício Cardoso-Silva, Fabricio Almeida-Silva, and Thiago M. Venancio.

Genome Biology 26.1 (2025): 1-14.

Comparative metagenomic profiling of seed-borne microbiomes in a landrace and a hybrid maize variety.

Henaut-Jacobs, Sarah, Beatriz Elisa Barcelos Cyríaco, Francisnei Pedrosa-Silva, Fabio Lopes Olivares, and Thiago Motta Venancio.

Seeds 3.4 (2024): 528-539.

Cannabis Expression Atlas: a comprehensive resource for integrative analysis of Cannabis sativa L. gene expression.

Barbosa‐Xavier, Kevelin, Francisnei Pedrosa‐Silva, Fabricio Almeida‐Silva, and Thiago M. Venancio.

Physiologia Plantarum 176.6 (2024): e70010.

The Soybean Expression Atlas v2: A comprehensive database of over 5000 RNA‐seq samples.

Almeida‐Silva, Fabricio, Francisnei Pedrosa‐Silva, and Thiago M. Venancio.

Almeida‐Silva, Fabricio, Francisnei Pedrosa‐Silva, and Thiago M. Venancio.

Comparative Genomics Reveals Novel Species and Insights into the Biotechnological Potential, Virulence, and Resistance of Alcaligenes.

Pedrosa-Silva, Francisnei, and Thiago M. Venancio.

Genes 14.9 (2023): 1783.

Comparative genomics and phylogenomics of Campylobacter unveil potential novel species and provide insights into niche segregation.

Henaut-Jacobs, Sarah, Hemanoel Passarelli-Araujo, and Thiago M. Venancio.

Molecular Phylogenetics and Evolution 184 (2023): 107786.

Discovering and prioritizing candidate resistance genes against soybean pests by integrating GWAS and gene coexpression networks.

Almeida-Silva, Fabricio, and Thiago M. Venancio.

Gene 860 (2023): 147231.

Genome sequencing of the vermicompost strain Stenotrophomonas maltophilia UENF-4GII and population structure analysis of the S. maltophilia Sm3 genogroup.

Pedrosa-Silva, Francisnei, Filipe P. Matteoli, Hemanoel Passarelli-Araujo, Fabio L. Olivares, and Thiago M. Venancio.

Microbiological Research 255 (2022): 126923.

BioNERO: an all-in-one R/Bioconductor package for comprehensive and easy biological network reconstruction.

Almeida-Silva, Fabricio, and Thiago M. Venancio.

Functional & Integrative Genomics 22.1 (2022): 131-136.

Pathogenesis-related protein 1 (PR-1) genes in soybean: Genome-wide identification, structural analysis and expression profiling under multiple biotic and abiotic stresses.

Almeida-Silva, Fabricio, and Thiago M. Venancio.

Gene 809 (2022): 146013.

Integrating omics approaches to discover and prioritize candidate genes involved in oil biosynthesis in soybean.

Turquetti-Moraes, Dayana K., Kanhu C. Moharana, Fabricio Almeida-Silva, Francisnei Pedrosa-Silva, and Thiago M. Venancio.

Gene 808 (2022): 145976.

Phylogenetic analysis and population structure of Pseudomonas alloputida.

Passarelli-Araujo, Hemanoel, Sarah H. Jacobs, Glória R. Franco, and Thiago M. Venancio.

Genomics 113.6 (2021): 3762-3773.

cageminer: an R/Bioconductor package to prioritize candidate genes by integrating genome-wide association studies and gene coexpression networks.

Almeida-Silva, Fabricio, and Thiago M. Venancio.

in silico Plants 4.2 (2022): diac018.

The state of the art in soybean transcriptomics resources and gene coexpression networks.

Almeida-Silva, Fabricio, Kanhu C. Moharana, and Thiago M. Venancio.

in silico Plants 3.1 (2021): diab005.

Exploring the complexity of soybean (Glycine max) transcriptional regulation using global gene co-expression networks.

Almeida-Silva, Fabricio, Kanhu C. Moharana, Fabricio B. Machado, and Thiago M. Venancio.

Planta 252 (2020): 1-12.